q2-kmerizer

bokulich-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-kmerizer-amplicon-2025.4 --file https://raw.githubusercontent.com/bokulich-lab/q2-kmerizer/refs/heads/main/environment-files/q2-kmerizer-qiime2-amplicon-2025.4.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-kmerizer-amplicon-2025.4 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-kmerizer/refs/heads/main/environment-files/q2-kmerizer-qiime2-amplicon-2025.4.yml
conda activate q2-kmerizer-amplicon-2025.4
conda config --env --set subdir osx-64

Activate your environment (amplicon) and run:

conda env update --file https://raw.githubusercontent.com/bokulich-lab/q2-kmerizer/refs/heads/main/environment-files/q2-kmerizer-qiime2-amplicon-2025.4.yml

Showing the last 30 topics from:

https://forum.qiime2.org/tag/q2-kmerizer

Topic	Replies	Views	Activity
kmers for taxonomy-free beta-diversity measures: an opportunity to integrate amplicon and shotgun analysis?	2	64	Wed Sep 02 2026
Should alpha diversity with kmerizer be recalculated based on results of alpha-rarefaction?	6	136	Sat Mar 21 2026
q2-kmerizer: a QIIME 2 plugin for k-mer-based diversity analysis	2	334	Fri Feb 21 2025

Links

Documentation

Source Code

Stars

Last Commit

fd404f7

Available Distros

2025.4: 2025.4/amplicon
2024.10: 2024.10/amplicon