| High but variable sequence loss (32-68%) during DADA2 filtering with V3-V4 amplicons (MiSeq 600 cycles) | | 1 | 3 | Wed Apr 01 2026 |
| Problem with cache using qiime cutadapt | | 10 | 49 | Mon Mar 30 2026 |
| Possible bug in qiime cutadapt demux paired (2024.10) | | 6 | 75 | Wed Jan 28 2026 |
| Q2-cutadapt add "--nextseq-trim" option | | 3 | 69 | Fri Feb 27 2026 |
| Huge difference of DADA2 output with and without removing primers | | 5 | 85 | Tue Jan 27 2026 |
| qiime cutadapt does not have an untrimmed sequences output | | 5 | 116 | Mon Dec 01 2025 |
| ITS denoising truncation | | 2 | 60 | Wed Oct 15 2025 |
| Duplicate barcode error, but barcodes listed are not the same. | | 7 | 90 | Tue Aug 19 2025 |
| Inconsistent results with discard untrimmed reads in cutadapt | | 7 | 117 | Thu Jul 10 2025 |
| cutadapt outside of QIIME2 | | 1 | 55 | Mon Aug 04 2025 |
| QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis | | 14 | 471 | Thu Apr 17 2025 |
| Analysing V4/V5 16S rRNA illumina Miseq paired-end reads. | | 16 | 366 | Tue Mar 18 2025 |
| Trimming Paired-End Sequences with cutadapt While Maintaining Pairing Integrity | | 2 | 71 | Mon Feb 10 2025 |
| Which position is best for trimming in a paired-end approach? | | 11 | 142 | Fri Jan 24 2025 |
| Comparing amplicon studies that use different primers | | 9 | 179 | Wed Nov 20 2024 |
| Trimming 5bp in QIIME2 2024.5 Amplicon | | 4 | 41 | Thu Nov 14 2024 |
| Error messages after cutadapt, but got trimmed files. | | 5 | 129 | Thu Nov 07 2024 |
| Cut adapt results in empty files | | 4 | 109 | Fri Oct 18 2024 |
| QIIME2 Demultiplexing Sequence | | 7 | 199 | Tue Sep 03 2024 |
| One vs two adaptor sequences using cutadapt | | 4 | 99 | Fri Sep 27 2024 |
| V3-V4 16s - variable size after merging | | 7 | 233 | Mon Aug 05 2024 |
| problem with cutadapt trim-single | | 6 | 137 | Tue Jul 02 2024 |
| Error during deblur process | | 8 | 302 | Sat May 11 2024 |
| Cutadapt - trimming adaptor and primer sequences | | 3 | 222 | Sat May 11 2024 |
| Missing plugins to load Artifact to run cut adapt | | 2 | 141 | Tue May 07 2024 |
| Seeking Advice on Primer and Adapter Trimming for MiSeq Amplicon Sequencing Data Using Cutadapt | | 0 | 167 | Thu Jun 13 2024 |
| Removal of Illumina Adapters | | 1 | 192 | Thu May 30 2024 |
| Primer show up again after removal using cutadapt in qiime2 DADA2 | | 11 | 401 | Mon May 06 2024 |
| I fell into the swamp of 273bp after trimming adapters and primers through cutadapt... | | 8 | 240 | Mon Mar 18 2024 |
| Pyrosequence work in Qiime2 (Barcode) | | 11 | 276 | Fri Mar 15 2024 |
